PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526883.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 293aa    MW: 32960.5 Da    PI: 4.4781
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-09123166755
                     HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     ++Er  R+ +N+++ +Lr l+P+ +      Kl+Ka+i   A+++Ik+Lq
  XP_010526883.1 123 MAERMMRKLLNDRLYKLRCLVPNiS------KLDKASIISDAIDHIKELQ 166
                     68*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.205116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14116179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-10122171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-7123166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-12123179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.07E-9123170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDNTTQKFLG KIRSLVDWDY FVVWRLSKRF VKLLGGCCGG DEEMISDNNG GEGFLRDSKK  60
MDMNMLKDVA QDDVPPRMEG LTSSMGTVAL NMHHVAECGN PSLLDKEQQD VDDEEEHDED  120
QMMAERMMRK LLNDRLYKLR CLVPNISKLD KASIISDAID HIKELQKEVK ELQEELEKNS  180
DTADQHRQCG GMSSIDGADN ELMMKGGGVF ESQVEVAMAK VDGSYEFSVK VICEYELGGF  240
TKLMEALDSL GLVVINANTT RSLDLVSNVF KVERKDGEMV QADHVRDSLM KIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526883.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
RefseqXP_010526884.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotQ9ZVX22e-56AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLD7L8873e-57D7L887_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.3__3272__AT2G16910.11e-56(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.15e-47bHLH family protein